Microbiome data

Over-optimism in unsupervised microbiome analysis: Insights from network learning and clustering
In recent years, unsupervised analysis of microbiome data, such as microbial network analysis and clustering, has increased in …
Theresa Ullmann, Stefanie Peschel, Philipp Finger, Christian L. Müller, Anne-Laure Boulesteix
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Over-optimism in unsupervised microbiome analysis: Insights from network learning and clustering
NetCoMi
Network Construction and Comparison for Microbiome Data
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NetCoMi
NetCoMi: network construction and comparison for microbiome data in R
NetCoMi is an R package that implements our proposed workflow for constructing and analyzing single microbial association networks as well as quantifying network differences.
Stefanie Peschel, Christian L. Müller, Erika von Mutius, Anne-Laure Boulesteix, Martin Depner
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NetCoMi: network construction and comparison for microbiome data in R
Maturation of the gut microbiome during the first year of life contributes to the protective farm effect on childhood asthma
Growing up on a farm is associated with an asthma-protective effect, but the mechanisms underlying this effect are largely unknown. In …
Martin Depner, Diana Hazard Taft, Pirkka V. Kirjavainen, Karen M. Kalanetra, Anne M. Karvonen, Stefanie Peschel, et al
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Maturation of the gut microbiome during the first year of life contributes to the protective farm effect on childhood asthma