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Statistical end-to-end analysis of large-scale microbial growth data with DGrowthR
Quantitative analysis of microbial growth curves is essential for understanding how bacterial populations respond to environmental …
Medina Feldl, Roberto Olayo-Alarcon, Martin K Amstalden, Annamaria Zannoni, Stefanie Peschel, Cynthia M Sharma, Ana Rita Brochado, Christian L Müller
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Statistical end-to-end analysis of large-scale microbial growth data with DGrowthR
The Janus face of Bifidobacterium in the development of atopic eczema: A role for compositional maturation
Background: Atopic eczema often develops in the first year of life, when the composition of the gut microbiota is most plastic as …
Martin Depner, Diana Hazard Taft, Stefanie Peschel, Caroline Roduit
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Over-optimism in unsupervised microbiome analysis: Insights from network learning and clustering
In recent years, unsupervised analysis of microbiome data, such as microbial network analysis and clustering, has increased in …
Theresa Ullmann, Stefanie Peschel, Philipp Finger, Christian L. Müller, Anne-Laure Boulesteix
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Over-optimism in unsupervised microbiome analysis: Insights from network learning and clustering
NetCoMi: network construction and comparison for microbiome data in R
NetCoMi is an R package that implements our proposed workflow for constructing and analyzing single microbial association networks as well as quantifying network differences.
Stefanie Peschel, Christian L. Müller, Erika von Mutius, Anne-Laure Boulesteix, Martin Depner
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NetCoMi: network construction and comparison for microbiome data in R
Maturation of the gut microbiome during the first year of life contributes to the protective farm effect on childhood asthma
Growing up on a farm is associated with an asthma-protective effect, but the mechanisms underlying this effect are largely unknown. In …
Martin Depner, Diana Hazard Taft, Pirkka V. Kirjavainen, Karen M. Kalanetra, Anne M. Karvonen, Stefanie Peschel, et al.
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Maturation of the gut microbiome during the first year of life contributes to the protective farm effect on childhood asthma
Nonparametric change point estimation for survival distributions with a partially constant hazard rate
We present a new method for estimating a change point in the hazard function of a survival distribution assuming a constant hazard rate …
Alessandra R. Brazzale, Helmut Küchenhoff, Stefanie Peschel, Tobias S. Schiergens, Heiko Trentzsch, Wolfgang Hartl
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Nonparametric change point estimation for survival distributions with a partially constant hazard rate